README.md

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# FlywayNetVEM R package

Estimate migration birds flyways network from counts using 
    a Factored Hidden Semi-Markov Model (HSMM). 
    Implements a variational EM algorithm (Expectation Maximization)


## Check sources and build the manual

To check the package and build the manual:

`
library(roxygen2)
library(devtools)
options(cli.hyperlink=FALSE)  # bug in cli https://github.com/r-lib/cli/issues/441
roxygenize("FlywayNetVEM")
devtools::check("FlywayNetVEM")
devtools::build_manual("FlywayNetVEM")
`