Merge branch 'dev_Jules' into 'master'

Fix issues and improvements from first release

See merge request !3

	Ref: #41

	Ref: #113

	Ref: #41

	Ref: #20

	Ref: #20

	- catch specific output files
	- Improve output files name

	Ref: #41

	Ref: #41

	Ref: #42

	- New sub-workflow for RNA QC against transcriptomic reference
	  and dependencies
	- Add salmon in multiqc

	Ref: #19

	- change glob pattern to discover files in subdirectories if
	  they exist

	Ref: #39

	- Avoid empty data.frame printing
	- Improve void data.frame detection
	- Improve log message in error case

	Ref: #38

	- Auto detect machine name
	- Regex depending on machine name

	Ref: #37

	- adapt subworkflow and module using bwa

	Ref: #36

	- this process is replace by one in module_dna.nf

	- add reference genome name in SAM and log name

	- new version
	- increase memory

	Ref: #30

	Ref: #32

	Ref: #33

	Ref: #34

	- Move withLabel config to test and prod files
	- remove unused withLabel in base.conf file

	Ref: #34

	- change configuration selctor (withName -> withLabel)
	- add label scope in the process

	Ref: #34

	- Improve NovaSeq data detection using regex
	- Move process configuration in base config file
	- Increase informatic ressources

	Ref : #31

First deployed version

See merge request !2

	- CamelCase -> snake_case
	- Add new params file template

	Ref: #29

	- When project's name were not found in the SampleSeet, output
	  file had no name.

	- Create utils functions
	- Create email templates
	- Send email at start
	- Send email at end
	- Correct manifest values
	- Create summary map